Scaffold Ga0307510_10021242

Overview

Basic Information

• Taxon OID: 3300033180
• Scaffold ID: Ga0307510_10021242
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7565
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Schizophyllaceae → Auriculariopsis → Auriculariopsis ampla (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006648	Metagenome	367	Y
F098325	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_100212423	F098325	AGGAG	LCGVRGEGEAARFNNWGVGSGSSSGYRSSMRASATSRGEGVVVEGMPGERATEMLKWVGVGDSGICGKLLVSAGGCDSSDVDEFSFDNAVGFDKGGLVCSCSDESGTVGYGVTRLVNTGEYSDVVKLFNIGNGTGGE
Ga0307510_100212425	F006648	GGA	VANADPWMRFNMSGLHACKTLVGIMKDVEESLDDVRDDLHEVRAKTESAVEATTLGIKPSQA