Scaffold Ga0307510_10013267

Overview

Basic Information

• Taxon OID: 3300033180
• Scaffold ID: Ga0307510_10013267
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9770
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011464	Metagenome	290	Y
F057784	Metagenome	135	Y
F061393	Metagenome	131	Y
F065271	Metagenome	127	N
F069507	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_1001326711	F011464	N/A	VLINGLDVRLKCVQSGDIVDDQFLDRSCVIFPGSWGRRFPGSCADKSRDVQVVEGSRDESHVGSCDMFPQSRDAEVTGL
Ga0307510_1001326714	F069507	N/A	VVDNVTDELKVAPTILGEWGKEGVEFGLGKADDVGGGFFSELFKVKLGGGAKCFRSGLGSRW
Ga0307510_1001326715	F061393	AGG	VSKPKGRKAGENKLNQVQESGLDITKREIGGPQVLAYFGTDVDQGKGTVGVDVDGVMGVGAEGGDEVGGCGGIEVLGPGDVVEESAVDKFLR
Ga0307510_1001326716	F057784	GGA	VPEKGFVIEQGDLGGWGLVKVMGARELPICSAMSCCVKDVNKLVVNVMIKALSAEETTKGKDV
Ga0307510_1001326718	F065271	N/A	MVPVTHHIQEVLHGPYNALPRIKQPLPPTPHSHHTDISGNSDLVGATSQIYLLEVIYLSVTAPTRNCTELHIFKQHCLFLLQHRTEKHISHPLTELQTITLHIGAFNKFFWKYCTSITINGILEDYRGITHHSDTRTPCLVKVCTIFYSWDNPSYTVTLA