Scaffold Ga0307510_10010645

Overview

Basic Information

• Taxon OID: 3300033180
• Scaffold ID: Ga0307510_10010645
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10930
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011464	Metagenome	290	Y
F016489	Metagenome	246	Y
F016903	Metagenome	243	Y
F028665	Metagenome	190	Y
F028977	Metagenome	189	Y
F059500	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_1001064510	F016903	N/A	MLKRSPTPSELSTPSSFGLGSLYRTPVQTIIELEDEQMEEGETTDSDSSMEEGQIVDTRQSTPDSMDIGIPRVPSDWLQPDSP
Ga0307510_1001064514	F028977	AGG	VEMVKIEGGGTIFLSEDSGDGDVLESVFEVGPFVIESDHVLDAFFTLLLE
Ga0307510_1001064515	F028665	GAG	MSLMHSSRFFLSDVEEVVWGDKSSVGVGFGLIVFNFFCGSEGIWVGNVEWNIFRFLGSAATVASSANGDNVEWSCGSGLVSRGCEWESLVVDVGPEDRVVVVDWDHDGFMVDVNGVEGFSWSPSSPVVRDVEVSLSDEGTKEVEIIVVGVHANENNSVIGAKGEDGRGGKS
Ga0307510_1001064516	F016489	AGGGGG	LILYATLDIWETTSKGPYLLGDNLGVMLLGSRRFVPSNQTLDLTGNGEWRGRSLIQDSCTLRCASWAAFLASSIAESRWSRDGMSVFLVGW
Ga0307510_1001064517	F059500	AGGGGG	MSVDFGHLTGSAAFDVFSYEDFHSGPPVIGCDELESFGNSGVSSGFVVVKKGCYSPPKVIVCHDNKCGAVVPVSAVQ
Ga0307510_100106457	F011464	GGA	LLIVPTICHVLINRLDTHPKHVLSGDIVDDHFLDRSCVIFPGSRGRRFPGSRADKSRDVQVTKGSRDESRVGSCDMFPRSCGAEVTGL
Ga0307510_100106458	F011464	AGG	MHPKRVLSGDVVDDQFLDRLCVIFPGSRGCRFPGSCADKSRDVRMAKGSRDESCVGSCDMFPRSRGLGVTGL