NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307510_10007863

Scaffold Ga0307510_10007863


Overview

Basic Information
Taxon OID3300033180 Open in IMG/M
Scaffold IDGa0307510_10007863 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12704
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (52.63%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.654Long. (o)-122.839Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011464Metagenome290Y
F016489Metagenome246Y
F016903Metagenome243Y
F059500Metagenome133Y
F075486Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0307510_100078631F011464N/AVLINGLDAHPKRVWSSDFVDDQFLDRSCVIFPGSQGRRFPGSRVDKSRDVQVAKGSRDESRVGSCDMFPQSRCTEVTGL
Ga0307510_1000786310F059500AGGAGGMSVDFSHLTSSTAFDVLSYKDFHSRPPVVGRDKLEGLGNSGMSSGFVVVKKGCYSPPKVIVCHNNKCRSVVPVSAVQ
Ga0307510_1000786311F075486GAGGMPVVLLSAAQYPKVLFKGLIGSFTGSICLRVISCTDVLADIQDAA
Ga0307510_1000786312F016489AGGGGGLILYATLDIWETTSKGPYLLGDNLGVMLLGSRRFVPSNQTLDLTGNGECCGRSLIQDSCALHCASWAAFLASSMDESHCLRDGMSVFLVGWCICGV
Ga0307510_1000786318F016903N/AMMPLKRERSDPEMEQSMSPEEQPTPPDSPKTSVVSTPSSFGLADLYRTPVQAIIEVEDELMEEGETSDSDSSMEEGQIADTRQSTPDSMDIGIPCVPSDWLQPSSP
Ga0307510_1000786319F011464N/AVLINGLDTHLKHVLSCDVVDDQFLNRSCVIFPGSRGCRFPGSCADKSRDTQVVEGSCDESHVGSCDMFPWSRDTEVTGL
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