Scaffold Ga0307510_10001407

Overview

Basic Information

• Taxon OID: 3300033180
• Scaffold ID: Ga0307510_10001407
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26383
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (54.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055313	Metagenome	138	Y
F057784	Metagenome	135	Y
F065271	Metagenome	127	N
F072893	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_1000140711	F057784	AGGA	VPEEGFVVEQGDLSGWGLVEVMSARELPICSATSCCIKDVNKLVINVMVETLSTEKTTKGEDV
Ga0307510_1000140713	F072893	GGGGG	VLAYFGTDVDWGKGAIRVDVDRVVGISTEGGDEVRGCGSVEVLGPGDVTKELAVDEFL
Ga0307510_1000140714	F055313	N/A	MAVLFVVDCVLMRMVVGREARWGGKEVLEGGDIDHRIEYGERLRSG
Ga0307510_1000140719	F065271	N/A	MVPVTHHIQEVLYRPYNVLPRIKQPLPPTPHSHHTSILGNSDLVGATSQIYLPEVIYLGITAPTRNHTELHIFKQHCLFLLQNRTEKHISHPLTELQTITPHIRAFNKFFWKYHTSITINGILEDYRGITHHSDTRTPCLVKVCTIFYSWDNPSYTVTLA