Basic Information | |
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Taxon OID | 3300033179 Open in IMG/M |
Scaffold ID | Ga0307507_10001674 Open in IMG/M |
Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 48995 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (61.11%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oregon | |||||||
Coordinates | Lat. (o) | 44.5508 | Long. (o) | -123.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000247 | Metagenome | 1464 | Y |
F002220 | Metagenome | 581 | Y |
F006298 | Metagenome | 376 | Y |
F041034 | Metagenome | 160 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307507_1000167411 | F041034 | AGG | VDISGNLISVKFGRILRLVELGRLFRYRVDISRKFRLVNPSGFFRF |
Ga0307507_1000167413 | F002220 | AGG | VHLLKSNGIIKLSFSFSFAIRFAFTNLSSLRAENWSSPKIIILSVYIPIIPNKVPVVVIRKHRLNIEVVIKSFSL |
Ga0307507_1000167415 | F006298 | N/A | MERKLIIKNSNGLYAIYLTILSEVLVRGVVLNFHIYKELFDLINLTLKIFYAFILNQEALEVGYSDLAISNISYTLTELVICLFSLIKGVSS |
Ga0307507_1000167416 | F000247 | N/A | MHVALNCKRTLHIEVARTSCLTGSLNTFAGKTPVPSSDVLFARPFVDGKLYYNSSLSLNKSIDLTSTGL |
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