Scaffold Ga0307507_10001518

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001518
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51847
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (56.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005943	Metagenome	385	Y
F009949	Metagenome	310	Y
F013992	Metagenome	266	Y
F024756	Metagenome	204	Y
F064533	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000151816	F013992	GGA	MAVIIVLYIVINIYNHSRPVIMVANNLAGLIFPRVGCRDLSIRFSNKLSL
Ga0307507_1000151820	F064533	N/A	MGSYIYPLYPRIGISLGSSLRGVFKKLASLIVYWVSIKVKVFALKLAKVEVKT
Ga0307507_1000151823	F009949	GGA	MGNAIGGKYLRAPKGPNKGRKYNGNTLKDRNNRTKRLALLGRCPSG
Ga0307507_100015183	F005943	AGG	MSRNAGNGYKAYVFGESTRRCAIDRKGRGRKEVIYPRVADISCTRGVCESTGFSYRGPCGRVP
Ga0307507_100015189	F024756	GGA	MPIYSIAHYTTAEESAGINSLKYLMLCLGSIIAVGEIEISNLYKTFLDLLF