Scaffold Ga0307507_10001084

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10001084
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60422
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F006298	Metagenome	376	Y
F021494	Metagenome	218	Y
F038017	Metagenome	166	Y
F041673	Metagenome	159	Y
F053802	Metagenome	140	Y
F091119	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100010841	F000630	GAG	MGVKGIEAVLGKRNLSRSIVNAIGGKYLRALRRPNKGRKYNSNTLKNRNNRTKRLALLGRCPSR
Ga0307507_1000108413	F091119	AGGCGG	MLWDKGSGYRAYIFKKSIRRYAINCKGQERKEVIYLRVANVSYI
Ga0307507_1000108416	F053802	AGG	VDSRVTRNYISLVVVKRIGLLYRQKQHLYLLIIILGDPIAYGGGIINLKIGPI
Ga0307507_100010842	F021494	GAG	MFCVPTSASKSKSIINSGSSPNLTSRLYALYRSAANIIFTALNLILNCPGLKLTIAIYKGLPIGRSLPYIPCDP
Ga0307507_1000108422	F041673	N/A	MAIKSLPGLIMFFLGMPYRPTSFFAAHEALLAGLSAGVYFRMGVAIGVTGRTWLVRVLLAVAAVCKVDV
Ga0307507_1000108423	F006298	N/A	MERGLVIKNSNSLYTIYLTILSKVLVGRVVLNFYIYKKLFGLINLTLKILYAFILNQEALEVGHNNLIISNVSYTLAKLVIYLLLLIKRMPS
Ga0307507_1000108424	F002220	AGG	MHLLKSNSVFKLSFSFGFAIRFAFTNLSSLRAKNWSSSKIIVLLVYMLTIPNRVPIVIIRKQGSNIEVVIKSFSL
Ga0307507_100010846	F038017	GAG	VVRSTRYRFKLKDKDELRVNLKHTAYYTLLWIAYIDNTCNIHRAPKDKNRKYLVRIY
Ga0307507_100010849	F002220	N/A	MESLFRERMHLLKSNSIVKLSFSFSFAIRFAFTSLSSLRAKNWLSPKIIILLVYMPTILNRVPIVIIRKYGLNIEVVIKSLSL