Scaffold Ga0307507_10000874

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000874
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66913
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F002220	Metagenome	581	Y
F008074	Metagenome	339	Y
F035578	Metagenome	171	Y
F102221	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000087423	F035578	GGA	MVAGVRDIAEGIINVNYKATVEVLMEVYLKTINRRNATFVRS
Ga0307507_1000087425	F008074	GAGG	LEYWLATKIYNINNNIEVEVVVIFKGELKLARGLLVYLVVIVVLYKMLNCLNFNFITYLLKNPKQSMN
Ga0307507_1000087427	F002220	AGG	MHLLKSNIIIRLSLSFSFTIRFTFTSLSFLRAKNWLSLKIIILLVYMPIILNGVPIVIIRKQGLNIKVVIKSFSL
Ga0307507_100008744	F102221	GAG	MSGIAYMLKVMSPLFKVVNYSQQFLIVGIIPNFRPLEFFTIEYYWSLIELGSVQIPIRLQ
Ga0307507_100008745	F000247	GGA	VYTYVIHIALNCKCTLCTEVARTSCLAGSLNIFIGKTLVPSSDVLFARPFIDRKLYYNSGLSLNESIDPTSTGL