Scaffold Ga0307507_10000603

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000603
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77640
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041034	Metagenome	160	Y
F056213	Metagenome	137	Y
F084969	Metagenome	111	Y
F088008	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100006031	F041034	AGG	VDVGGILMLVEFGGILGLVELGGLFRYRVDVGRNFRLVNPSRFFRFWFRV
Ga0307507_1000060310	F084969	AGG	MLPKALVITLLMVAITLGLEGDTSIRDTNSQLITVG
Ga0307507_1000060317	F088008	GAG	VLLHLIIKGLFRCNVIALNSLLIKIASFTVYNRANNSASVLDVITVPCLFAL
Ga0307507_100006032	F056213	N/A	VDFGIRRSILLYCLLITFAQALRAPSRSTPIREGFSLGLRDLIRLLISAELF
Ga0307507_100006036	F041034	GGA	VEFGRILRLVEFGKILRLVELGGLFRYRVDVNRNFKLVDPGRFFRF
Ga0307507_100006037	F056213	N/A	VGFSIRRSILLYRLLITFTQALRALSRSIPIREVFSLGLRDLIKLLTSVELF