Scaffold Ga0307507_10000579

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000579
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78586
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (65.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006298	Metagenome	376	Y
F007022	Metagenome	359	Y
F007161	Metagenome	356	Y
F024756	Metagenome	204	Y
F027375	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000057912	F006298	N/A	MEHRLVIKNSDSLCAIYLTILSKVLVRRVVLNFHIYKELFNLINLTLKVFYAFVLNQEALEVGRSDLAISDVSYTLTELIIYLFSFIKGVSS
Ga0307507_100005792	F007161	AGCAG	VPYYLINRYKLDRGIVLKLGLKVPLGIPYGLTKEVEHFSFFKKEIVVVNTELSLYLNPPILKGRVYPIRQ
Ga0307507_100005793	F007022	N/A	MCYNCNKEGYFALSCLELGDIKEIEEGKTSNKLGKEEP
Ga0307507_100005796	F007022	N/A	MVTCFNCGKNSYFTISYPELKDMGNIKEIEEEETSNKLRKEKP
Ga0307507_100005798	F027375	N/A	VLLNTVPLLDIVPLGIPNRSHRSKNRSASFAAVIIIKIAKYPKNFVYLLTITKIALATSPVLILVGGKPVIKFIINSNMGPYRIGSTDNSLYRRCLGIYTL
Ga0307507_100005799	F024756	GGA	MPIHSIAHCTTVGESAGTNSLKHLVPRLEFIIAAGEMEISNLYKTFLDLLL