Scaffold Ga0307507_10000484

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000484
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83870
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F009949	Metagenome	310	Y
F050927	Metagenome	144	Y
F094694	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000048419	F094694	AGCAGG	VVSILKVGLIYIVYKVLSKYIYLLTLTCIVAVINFIGKSKY
Ga0307507_1000048423	F002220	AGG	MYLLKSNSVIKLSFSFSFTIRFAFTSLSSLRAKNWSSPKIIILLVCMPIILNGVPIVVIRKQGLNIEVVIKSFSLWCLL
Ga0307507_1000048425	F009949	N/A	VNAIGGKHLRALKRPNKGRKYNSNTLKNRNNRTKRLALLGRYSSR
Ga0307507_100004845	F000630	GAG	MGVKGTEVDLGKGNLSHSIGNAIGGKYLRALRGPNKGGKYNSNTLKDRNNRTKRLALLGRYFSG
Ga0307507_100004846	F050927	N/A	MPEYPATRKEGSAYFIYKATPLLSIDVDKKIVREVINWYMLKVSNTHAEYMLYLYI