Scaffold Ga0307507_10000408

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000408
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89393
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F004663	Metagenome	428	Y
F026200	Metagenome	198	Y
F032886	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000040812	F004663	N/A	MGVLEENRLGNINKEGLLKNKSPKGDLRGAIAKLLGVVSLIEGEPVLLLPSLDKPY
Ga0307507_1000040813	F032886	GGA	MTMELEYLLIISNKDKKEANWEHLNLDDVTEAETKTITKQGLVTDVITLLDMISIALQDDRSNI
Ga0307507_1000040814	F004663	AGG	LEESRLGNINKEELPKNKLPKGDLRGAIAKLLRVVSLVGGELVLLLPSLDKPC
Ga0307507_1000040819	F026200	N/A	MLVHLFIIYIKDFFKFLLIRDIAIIISFSYSSYNIITFLFINACLTRDLFREPEADF
Ga0307507_1000040826	F000630	GGA	MGVKGIEAILGKRNLGYSMVNTIRGKHLRALRRPNKGRKYNGNTLKNRNNRTKRLALLGKCPSR