Scaffold Ga0307507_10000221

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000221
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109197
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (33.93%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015182	Metagenome	256	Y
F060493	Metagenome	132	Y
F064575	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000022144	F015182	N/A	MAGGCVTKAISNFFKEIFLVFSVVLGKNSGVFLEFNIELIK
Ga0307507_1000022146	F064575	AGGA	MVPKVSLFKRPASTQEEHEIQLGSEIEDNDNVIGIHEQICALAAN
Ga0307507_1000022148	F060493	N/A	MRRDFVVLMLSLDISSAYNNIPYKRLLYILRAKGFPE
Ga0307507_1000022149	F015182	N/A	MASGYVTKAISNFFKKIFLVFSVILGKDSNIFLEFNIELIK
Ga0307507_1000022155	F015182	GGA	MNNNNNIIIIIIIVITGGCIIKAISNFFKKIFLVFGIILGKDSGVFLEFNIELIK