Basic Information | |
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Taxon OID | 3300033179 Open in IMG/M |
Scaffold ID | Ga0307507_10000202 Open in IMG/M |
Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 111757 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (73.17%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oregon | |||||||
Coordinates | Lat. (o) | 44.5508 | Long. (o) | -123.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002555 | Metagenome | 548 | Y |
F004663 | Metagenome | 428 | Y |
F006298 | Metagenome | 376 | Y |
F021494 | Metagenome | 218 | Y |
F035578 | Metagenome | 171 | Y |
F037003 | Metagenome | 168 | Y |
F038017 | Metagenome | 166 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307507_1000020220 | F004663 | GGA | MGVLEKSRLGNINKEELLKNKLFKGNLRGAITKLLRVISLIRGELILLLPSLDRPY |
Ga0307507_1000020222 | F038017 | GAG | MVRLTRYRFKLKNKNKLRVNLKYVAHYILSWIAYMDNIYNIYKAPKDKN |
Ga0307507_1000020228 | F006298 | N/A | MERRLVIKNSNSLCAIYLTILSKVLVGRVVLNFHIYKKLFGLVNLTLKIFFAFILNQEALEVGYSNLIISDVLCALAKLIIYLLLSVKRVPS |
Ga0307507_1000020229 | F035578 | GGA | MVAGVGDTVEGIININYKATVEVLVEVYLKIINRRNAMFVRSQITS |
Ga0307507_1000020235 | F002555 | AGTAG | LEILGIFKDKDKEEGDNITDTLNTILQLLREESVEAS |
Ga0307507_1000020237 | F021494 | GAG | MSYIPTSLSKFESVIASSSSPILASWLYAPYKPAVCIIFAALNLILNYPGLKLTIAVYRGLPTGRPLPYVLYVPCVPV |
Ga0307507_1000020240 | F037003 | N/A | MSEYSGTYIARGAEQSTIEEIRKEQMVKGKTKEYATKDKTMEETVEVKRNHLSIPAMHHSRTIPSTERAYKDIL |
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