Scaffold Ga0307507_10000091

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000091
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 141562
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (49.18%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004663	Metagenome	428	Y
F005943	Metagenome	385	Y
F024756	Metagenome	204	Y
F027375	Metagenome	194	Y
F032490	Metagenome	179	Y
F041034	Metagenome	160	Y
F054477	Metagenome	139	Y
F056213	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000009118	F027375	GGA	VLILYRIFNKRQNKDQNALLNMVPLLDIIPLGVLNRSYRSKNRSASSAAVIVIKTVKYPKNFVYLLMITRIALATSLVLILVGGKPIIKSIINSNIGPCGIGSTNNSLYRQCLGICTLWHVLYLNI
Ga0307507_1000009136	F032490	N/A	MIVRRNSLLATMLNLKNNLIPILKPRHQSVLGGFNLLTLALTPKGKPSGLKDYNNYKGDINNVLSFINYTTIDK
Ga0307507_1000009137	F005943	AGG	MLRNAGNGYKAYIFGESTRRCAIDRKGRGHKEVIYPRVADISCTRGVRESTGFSYGGPYSRVP
Ga0307507_1000009143	F004663	N/A	MGVLEESRLGNINKEESPKNKLPKGDLRGAIAELLGVISLIGGKLVLLLLSSCRPY
Ga0307507_1000009153	F024756	GGA	MPIHNIAHYITVGESAGTNSLKRLVPRLESIMAAGETETSNLYKTFLDLLL
Ga0307507_1000009154	F027375	N/A	VLLNTVPLLDTIPLGILNRSYRSKNRSASSAAVIIIKTAKYLKNFIYLLIITRIALATSLVLILVGGRPVIKSIINSNIGPYGIGSTNNSLYRQCLGICTL
Ga0307507_1000009158	F054477	N/A	VSTSLGIKARTNKSNSLRINWRYRLSIGIGLFFRFNIVASKEYSHTIIGSLEV
Ga0307507_1000009159	F056213	N/A	VDFNIRHSILLYYLLITFTQALRAPSRSIPIREVFNLGLRDLIRLLTSTELFQPVSFT
Ga0307507_1000009160	F041034	AGG	VDVSRNLILVKFSGILRLVELGIFLRSKVDISRNFRLVDLSGFSRFWFRV