Scaffold Ga0307507_10000087

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000087
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 143913
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (60.61%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F002793	Metagenome	529	Y
F021494	Metagenome	218	Y
F053802	Metagenome	140	Y
F061416	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000008715	F021494	GAG	MSYVSTSLFKSKSVIASSSSPVLAGWLYAPYKPAIYVIFAALNLILNYPSLKLAVAVYRGLPTRRPLPYILYVPYVPIQSGNITQRHF
Ga0307507_1000008750	F000247	AGG	VQTDITYVILSYKRTLRTEVARTNCLASSLNIFVDITLVSSSSVPFAHLSADRKPYYNSSLSLNKSIDLTSTGL
Ga0307507_1000008755	F053802	N/A	VLVDSRVIRNYILLAAVKRIRLLYRQKEYLYLLITILGDLIAYRGGIINIKTGPI
Ga0307507_1000008762	F002793	N/A	MDITPLVDDLEMLGIFKDKDKEEGDSITDALSIIL
Ga0307507_100000877	F061416	AGG	MHFKVMQEGVKLATLVDQVAYVELFLTRRVLKWVKPYLTKIQVNGITTTNQEVRFIFIS