Scaffold Ga0307507_10000055

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000055
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 166777
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (57.84%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002793	Metagenome	529	Y
F032535	Metagenome	179	Y
F037003	Metagenome	168	Y
F038017	Metagenome	166	Y
F050242	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000005568	F032535	GAGG	MACKPIRATATRWYKILGHVGPNAIAQLPKHVIGAELTKFKTNKRAPLKIKYEVCLLVKH
Ga0307507_1000005572	F002793	N/A	MDIIPLVDNLEMLGIFKDEDKEEGDGVTDALSTML
Ga0307507_1000005575	F038017	GAG	VVRLTRYRFKLKSKDKLRVNLKHAAHYTLLWIAYIDNIYNIHKVPKDKNQKYLVRIY
Ga0307507_1000005578	F000630	GGAG	MGVKGTEVGLGKGNPSHSIGNTMGGKYLRALRGPNKGRKYNSNTLKDRNNRTKRLASLGRCPSR
Ga0307507_1000005586	F037003	AGCAG	MSEYSNTCIAQGAEQSTIEEIRKERTVEGETKEYATKDEITEETVEVKRNHLSVLVMHYL
Ga0307507_1000005589	F050242	GGA	MRLYVPASTAEDVSHFSLGSREVVYIDFKLVLQLKLPIIKYRVSSVYKQ