Scaffold Ga0334890_1030322

Overview

Basic Information

• Taxon OID: 3300033175
• Scaffold ID: Ga0334890_1030322
• Source Dataset Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_08-R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2357
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Source Dataset Sampling Location

• Location Name: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654

Associated Families

Family	Category	Number of Sequences	3D Structure?
F104571	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334890_10303221	F104571	AGGGGG	MIDTLKVFTDDFKISDNAGLFVQPATVNYETGETKEYNLFRKDNGAWVTGAKAYANTGNYQLTIKPIIGNESGKVLLFLQTSLPKIIHGENYQALNNDETMQAIDVIADDLNNRGVGVNLQECKTSRIDLFRMASANNPFSSYAPVFRLLNAKRSHTTDYGTTFTWANTQRELCVYDKATEMRNRGVKASALPTNAIRFEYRLKTSKVCKNETGAGNVRQLVNNLDNLQDVYRQALENSIFSLDAKALATVTANELENGLRVYSKRYGGAFVNRFFRDFGAYALGRLTGVETVKSVLSSVLDDRYKLWRHSKLF