Scaffold Ga0334888_1065530

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334888_1065530

Scaffold Ga0334888_1065530

Overview

Basic Information
Taxon OID	3300033172 Open in IMG/M
Scaffold ID	Ga0334888_1065530 Open in IMG/M
Source Dataset Name	Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_3_08-R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1284
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Source Dataset Sampling Location
Location Name	Netherlands: Wageningen, Gelderland
Coordinates	Lat. (^o)	51.9691	Long. (^o)	5.6654	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073228	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334888_10655303	F073228	GGAGG	MAITIGDIMDANNSKYGEFLYRIVMVYPHNLEVDKTELARLIKINNNTLTFERKNGEKFRIDERDIEHMEIFKSPNYRGGI

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