Scaffold Ga0335077_10059947

Overview

Basic Information

• Taxon OID: 3300033158
• Scaffold ID: Ga0335077_10059947
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4588
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002396	Metagenome / Metatranscriptome	564	Y
F003157	Metagenome / Metatranscriptome	504	Y
F106052	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335077_100599471	F106052	N/A	DQPLLECYEELGQRFPQGLAGLPQLPEELSGAVHQNEAVHT
Ga0335077_100599476	F003157	GGAGG	MRDPAANPKRENAVLSGFARFGGLDQLDWLMILISVLLGTIAKQHHFLDLPDWFLEWVSPFLLMVFGYKARRKITEMVESWRERGKDTREE
Ga0335077_100599477	F002396	GAGG	MRSLFPSTYDRADVLMSAGCSTLVSAALILVIPLVGIILLEILLGLFFIGCALAARARLRIQARSLVKEGPEGSTNAKAKWFDRYDVLMILAVIVIYSSMSGLLRHSGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDQKAETHDGRSHMDAGEKQEIAGKETVERCQ