NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335073_11164914

Scaffold Ga0335073_11164914


Overview

Basic Information
Taxon OID3300033134 Open in IMG/M
Scaffold IDGa0335073_11164914 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)778
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006594Metagenome / Metatranscriptome369Y
F062993Metagenome / Metatranscriptome130Y
F104334Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0335073_111649141F104334N/AMERSKESLLNRILRRGEDAGLLVNAAALMLVEVGYVAWLERLPTLPSPAHPAGFLDLPHW
Ga0335073_111649142F006594N/AMDQDVEITAGYVLRSVRTRMSPAIALEADCVQKPPATRIVETFRSRFGKAYDAGVWKRLSNVVLEPANPFDVKTRRHLRQEALILGTFIFTTLGLALYFNLRAIAG
Ga0335073_111649143F062993N/ALRSPHSSSSLYALSQSQLVGDGIRLTSQGQSSVKVLNAEVHANAVAPGGTTWGLVAFEWPARANGPTVLKFAFPSDGAGEVSAVLVL
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