Scaffold Ga0335084_10165793

Overview

Basic Information

• Taxon OID: 3300033004
• Scaffold ID: Ga0335084_10165793
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2298
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006594	Metagenome / Metatranscriptome	369	Y
F012405	Metagenome / Metatranscriptome	281	Y
F033738	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335084_101657931	F033738	N/A	KDIYREGDRLYVRYAIQNRGRSTYVPGTPGVFTLRSPRSSSSLYSLSQSQLVGDGIRLTSEGQSPVKLLNAEVHAKAVAPGDTTWGLVALEWPARTNSPAVLKFAFPSDGAGEVSAVLVL
Ga0335084_101657932	F006594	N/A	MKQDLKITAETVLHMVRTQMSPAIPQESGGIQTDSAARIVELFGRRFGKAYDAGIWKRLSNLFLEPANPFDVKARRQFRQEAIVLGTFILTALGLALYFNLKAIAR
Ga0335084_101657933	F012405	GAGG	MARSKEPLLIRMLRRGEDAGLLVSAAALMLVEMGYVAWLERLPALSSRAHPAGFLDLPPWYERPRVEVTLLLTVLGGMIAWAAWGVFDFMRSRPEETVVPSHRAMVYRRLRTAAFYAVVAGADLLVMQFLRT