Scaffold Ga0335076_10819834

Overview

Basic Information

• Taxon OID: 3300032955
• Scaffold ID: Ga0335076_10819834
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 812
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001023	Metagenome / Metatranscriptome	804	Y
F004701	Metagenome / Metatranscriptome	427	Y
F006122	Metagenome / Metatranscriptome	381	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335076_108198341	F006122	N/A	MAIILDADVIIRGEKGTFDLQGWVESRPNEQFEIAAITVAELWHGVEWATPEHRVARKRY
Ga0335076_108198342	F004701	GGAG	LNVNRAHYQNVSFVLLKNGKAVARLIPDKEIICTGRELARALADAQLPENEARLWHRDLQVARKALNDPY
Ga0335076_108198343	F001023	N/A	ARLAQQRGQAPFRFSAYEEKVLWGDLADVFQLVYLFSLSDDPIRAKLAQQHFDGVYLDGRKMGFLSEEFRSEMLEIWKVKYLQMARFREVISLIPMEIRLEHFLNDGDSPDIPIPVYVGYLNQIREMARR