NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335076_10180759

Scaffold Ga0335076_10180759


Overview

Basic Information
Taxon OID3300032955 Open in IMG/M
Scaffold IDGa0335076_10180759 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2017
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065971Metagenome / Metatranscriptome127Y
F084469Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335076_101807591F065971N/AGRADKCFAGQISGCYDVRFWAGSTATGGVIVDDASKVGDCTICVNGAGLVTGGTCRCNVHVPGELVLETLSEIEGGGYTLGENCQSSTGYLWIETSSDEICGIGSALAFDFAVAQQGNELIGSCDPATFILNNKSLFNAGYGIPCAFEGFLQ
Ga0335076_101807593F084469GGAGGMLKLKSIVSIALVVAVCGVAGISLAKAKAARCDFNGDYSFFFWDPDYNISGVGYFTVQVDPSTKCRSGVVLPGGILNCSYGFDDEYEDFIEDGFVFLESDGEGTMEIETNSSDGICDTGTNAIELDISLVRGGKSVLFNSDGEEFAGSGLIPQAGYDYTITGRA
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