NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335076_10063770

Scaffold Ga0335076_10063770


Overview

Basic Information
Taxon OID3300032955 Open in IMG/M
Scaffold IDGa0335076_10063770 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3637
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021165Metagenome / Metatranscriptome220Y
F052160Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0335076_100637702F052160N/AMGRSDILDSEIADETLQDWLQQKLEHATSLLSGEGRVRVERVDPLRVDVDLNFTVSGTSVADVMERYRDDFRALGSITQGIDISETKNYKIFFPRIEGEQFPVFVRIDPDSGLPTYTED
Ga0335076_100637703F021165GGALDFQVNNETYYIDLAEEQGQWMVFAQTPTGVRRIPVYVDAPESEEVPLFVEDKKRRRIVN

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