NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335076_10028819

Scaffold Ga0335076_10028819


Overview

Basic Information
Taxon OID3300032955 Open in IMG/M
Scaffold IDGa0335076_10028819 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5574
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039236Metagenome164N
F066222Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0335076_100288194F066222AGGAGLAEVNISDIEALADFRSHLSEFNKNLAESFATMRTHWRDLGEIWRDDMYRRFGDALEEVTPGVEKYLASTDGHEAYLLALLERLRAVRELSAG
Ga0335076_100288195F039236AGGAGMTLPADAPATALSPYLSLRQAVRPAIVTYTVLANEQEQAGALAGEAEQLLEATRELLEAVGLVHLLSPRPGAEIAGDDHEDRQARLLAAYADAGILWAKVVGNSIALADGLLAQARWDDVLRLADFLDNAGEKVVAESLRGQANEALNANYYARMNSIHDKMSKQETAAAIQTLRSLPRGFPERKLEIALRLRPLGTSVKNLTRPDRQSRNTIDSAMSSLPDSADYYLAVLADIFQSLVK
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