Scaffold Ga0335072_10000022

Overview

Basic Information

• Taxon OID: 3300032898
• Scaffold ID: Ga0335072_10000022
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 372695
• Total Scaffold Genes: 330
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 290 (87.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000312	Metagenome / Metatranscriptome	1324	Y
F003260	Metagenome / Metatranscriptome	497	Y
F092532	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335072_10000022146	F003260	GGA	MKNPLLAVGVCVLLLAGCQKQPQTDYNALERTGMWSSTLDELKGLKLSDLEIAQLTKLKNAGASDDLCVALVKAARAHNHEFSSGDSAMDLSRAGYADAQILEMAQSDQMDILSGEAVTLKLIGLSNATVQSIIHRRIQGLPTLTSEQIGRLKNTAMSEKQIIEIVNEGLSDQQAEALIARREAERDHSNTGFVRVRGRRPH
Ga0335072_1000002225	F000312	AGGAGG	MNRSILIILIPALLVAAGYVVVLRMMGFPPGYPRLIIAMVLFFGAIYWLSKRSGKKANTSGQ
Ga0335072_10000022275	F092532	GGA	MAKNKETSTRGAGKGQKLLSGTRDQLIKDLQRVHKVFPTAEPDRDFYRAHGKYSDAAVKVHFSRFKDFAAAAVPEMTPDEAFKLTVRNLDQAIDLTQKWHEDAEYDEGWDKHQTDAVNARVHKLDDLFFTWRLIKEMDAEEQAEEPVPTVVLPDPEF