NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335071_10116909

Scaffold Ga0335071_10116909


Overview

Basic Information
Taxon OID3300032897 Open in IMG/M
Scaffold IDGa0335071_10116909 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2613
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016480Metagenome / Metatranscriptome247Y
F068636Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0335071_101169091F068636N/ALQCIAALGPDFALKEHAYTASGDPDKWKRDRNRRPILDPDAIAEAMGISRPDVHRYLCQARAILRQAFNADGRLFQIH
Ga0335071_101169092F016480AGGAGGMDREFQEYRFARIEARNITKTRLEVQFKDGTGGLEQIEKAIAQLIMMEPTCTPWRQSEVERAGSRDGTRMAALEFYWTHRRS

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