Scaffold Ga0335075_10192656

Overview

Basic Information

• Taxon OID: 3300032896
• Scaffold ID: Ga0335075_10192656
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2453
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F014996	Metagenome / Metatranscriptome	258	Y
F029856	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335075_101926563	F014996	N/A	VRPVHADIDALKGFHEALVRFRYAAREAADRGEAEIEMTRASLAAKASRWQAQLEQDQAELDACRSRGGADCSAYALAVEQSRERLEHVRRWQQRVEVQAGEFGGVASVFRNLLESGVPRSESQLLASIAHLEAARRVQAGGS
Ga0335075_101926564	F001698	GGAG	MSGVINDIDALTEFRAHLMRFNHDLAENFATMRGHWRELGEVWRDDMYRQFGEALDEVTPGISVYLSATEGHEAHLAALIERLRQYLETGLGAGTGAGAGTSRAETDRGKQA
Ga0335075_101926566	F029856	N/A	RPSETSARLVRLADKGPDAGLHVVAWADGYVTAERALRRAGLAHFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSVASLYSFARTAFGGSA