Scaffold Ga0335075_10071596

Overview

Basic Information

• Taxon OID: 3300032896
• Scaffold ID: Ga0335075_10071596
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4693
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068257	Metagenome / Metatranscriptome	125	Y
F105559	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335075_100715962	F068257	N/A	VELLRRVVSPGEPRSPRPRPTARARVLALGVAAGVCCLAASGCSSFDKALGQQQVDVYFNTNTTVAYKMHVRAACNNLPNVKAEPIATGVPLASAIDIVVYNTDGASLVDTTRLEECLNKFSQVEGINPTDSSDDS
Ga0335075_100715966	F105559	GGAG	MAQMEHKDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA