NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10556826

Scaffold Ga0335074_10556826


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10556826 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1164
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002040Metagenome / Metatranscriptome600Y
F046674Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_105568261F046674GAGMLAWFAAAVSLWLGARRDSGAFARGYRWLAGAAALYCAALITQQILGSALTPESG
Ga0335074_105568262F002040N/ADPLGSTFTGTFDLHVFGHKVTPPPPPGNYGDEVNSFGNGFDVYQQHQAVNAIIAGWTATQADPATHFIRLAGTFAGAFQYEYAPQGAGTGLCVSDPGFDAAGTGLTDGLVLRGCNTGPWQQFVPQFNGTLRNVATGLFVNPDGTGAQLRGGTAPTSWGGSVYTWTDFARLPG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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