Scaffold Ga0335074_10186311

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335074_10186311

Scaffold Ga0335074_10186311

Overview

Basic Information
Taxon OID	3300032895 Open in IMG/M
Scaffold ID	Ga0335074_10186311 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2557
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5059	Long. (^o)	-80.2517	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022912	Metagenome / Metatranscriptome	212	Y
F060173	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_101863111	F060173	AGGA	MTGKRYYLTTLAAWQRHAHRFANSHWVALGDSPPTAAPRELDGATPIAVLIEADEGAHVALEDDSAFEPLPHPLSPRPLSASAQAALALHGVPAGATAFDASEALARLH
Ga0335074_101863114	F022912	N/A	IAANSCGLIERSTGIAELFFGSNNSSGKIYALLAGQYSDDGNAINSYYTTAFLAATGLSGRNLFGYMTAYVQGSGSLALSAFSPGDASVTALGTGTLASPAPKDLELFTNLLAERVAYQFGTNAAGSWFSLTKLVPWAKPDPYALVRGTN

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