NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10088555

Scaffold Ga0335074_10088555


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10088555 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4118
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021139Metagenome / Metatranscriptome220Y
F026322Metagenome / Metatranscriptome198Y
F051307Metagenome / Metatranscriptome144Y
F069114Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_100885554F051307GGAMAQHPLHLLGFEPLRPAPNIGTVEPASGRTVVQPSSNPAVNQALATAEMPAFRAHLLQAIAQIPGATLARSRDAKNPHRLAQKIVREGQPAETVNDYGAVQIAVASPQAKEAVADAVKQSFPVLREQDRFAMGDPQYHYRADSLQVQMPNRASEELQIVPQEVLEANATEHHDYKKARNAELNGRNAEAAKAAARALNDRAMDRFNSRNGVTKSRLQKGYRVRLPDGAVARVEYADPNMRIVRVRTEDGRNITVRCKDLRGAGEGNCRD
Ga0335074_100885556F069114AGGAMADQPQDEASRLLEKFLSPAEAQSLVLPPPTHAPNSGPGESTPLSGTLAGPPSQAVPSRQTESPGQGLASRFAAAAPDRSADPRYVKVYSKGQTGYLPLANLRAAREIDRNLQVLSEGQP
Ga0335074_100885558F021139GGAMKSIAPMKKITLRQATCEDWPAIQRLHREHQAAQGTNYELPWLFGPAIAIALVGMEENGTLRNCVYVERVAELRFVGCDARATAFSRREVEGLSYLLKLQGFRWLECFVPRPLQKMIQKPLLRAGFACVDGELAHFTKDLRGNS
Ga0335074_100885559F026322GGAGGMYSLHQQYLDTASGFHVIELRDERGHRHLVQLAVGHDTCPACGAVYPKDNLDTLDPAATVQQVRDALNTSQQQILMYAGKHGVVVK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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