NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10027182

Scaffold Ga0335074_10027182


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10027182 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8045
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012173Metagenome / Metatranscriptome283Y
F012995Metagenome / Metatranscriptome275Y
F032747Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_100271821F032747N/AKLKIERTQPEMPTDAPPRQMIQNTLASRTLTALPGEVFV
Ga0335074_1002718215F012995N/AVAVIRGKHNAESELKKFEEVQPSSDRHEGWRYLIDKTDLKAGTDPAEATQHRQAELEERESKALRETETPRSSWPHRQR
Ga0335074_100271828F012173AGGMMTTLPPASLLSTAIDGVVKREEVRKKRVLLVDTAQAKRELRAEVMRKFGMDVDCAADIAEARSWWRAALYDLVLINMGKGHGHRDKFCDDVRSATPPQRLAFLVGQPEYLADAPNGDAELLAQNGDEQIARDLNLNFAADRRDVNQRWGILEASRRISEVRSASVARTQAMRALPSPPRDSEGRPSKPNPTTSSLDDLLREELR

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