Scaffold Ga0335074_10003080

Overview

Basic Information

• Taxon OID: 3300032895
• Scaffold ID: Ga0335074_10003080
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22699
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020777	Metagenome / Metatranscriptome	222	Y
F032020	Metagenome / Metatranscriptome	181	Y
F062087	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_1000308015	F062087	N/A	MTTSEQYRARIRALRLTPIGRGSTGKYQFHRALGGRVYPIRDPDDLTEAEREEMIKYYEQQFSPE
Ga0335074_1000308016	F032020	GAGG	MLRGIDIDIVIVPGNAGLVHARSRQMLSFMLMGRSEDELWRDMDPVLRDLFDIQGDKVVMMTIDRPGRRVRVDVE
Ga0335074_1000308018	F020777	GGAG	MGATSEHCRPPGPFRDQFVLVLKEVLQVFATTTPGYDYDKRSRWAYAFNPMADGDMDKPVYATMAALRAPNFAALRVGVTEGGQVVIEVEHRRLVRPYITNDIENPKEFRKIQNGLRRIVEQFERAAGISPHDLFNGFVFGPRYRELAEQRLTDGRRG