Basic Information | |
---|---|
Taxon OID | 3300032895 Open in IMG/M |
Scaffold ID | Ga0335074_10002044 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 27478 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (74.36%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5059 | Long. (o) | -80.2517 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000632 | Metagenome / Metatranscriptome | 971 | Y |
F007230 | Metagenome / Metatranscriptome | 355 | Y |
F061061 | Metagenome / Metatranscriptome | 132 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335074_1000204418 | F007230 | GAGG | VSIHADDEFSLRFALESELDDVLPREGLAGLVIARHRKVRRRCVAGAVSLVVVCAGIGVPLGLSGPSGKPPQHNPGQRSDQHTGSITQTPHDHTGVVLAIDRSVPVFTAAAA |
Ga0335074_1000204432 | F061061 | N/A | MAQPGEEPRPKPSPAALVSNWTSYDAPFATKLRMAVSNTLIKLRRHQACCGNNGQPGC |
Ga0335074_100020447 | F000632 | AGGAG | MSSTDPTTIGVHRALHEALNSAREAQHRLEDGEATPDLDDLVELATLLAGLSEALTAVNSGMTAKARAAQASHT |
⦗Top⦘ |