NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10001283

Scaffold Ga0335074_10001283


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10001283 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34212
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (80.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F013663Metagenome / Metatranscriptome269Y
F014996Metagenome / Metatranscriptome258Y
F037832Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_100012832F037832GGAGMTLQERIVEPAMAMSPTNPSPYLSLRQAVRPIIFAQSLMAEDRERARQLAAECEDLLFLTRELLKVAGLTSILGPAPTPALAEEDGGGRQAQLLSAYAEAGLLWAKVVGSTMALGRALLDRGDRDGARRLAAFLAGAGEDSTAAELRIELGKAVWDIHREQLRGIGSTMPPAAVEAAITALRAVLHEVPEDFPDRNREVNQFLVPLAASVHAIMREQGIDIPYSSRIEHIAAGGVARYPDIVKLSLDEIAAEFEGLCRRPGNE
Ga0335074_100012833F001698AGGAGMSGVINDIDALTEFRAHLIQFNRDLAENFATMRGHWRQLGDVWRDDMYRQFGEALDEVTPGLSAYLSATEGHEAHLAALIERLREYLETGIGAGAGASRAGTDRR
Ga0335074_100012834F014996GGAVSRVHADIGALKGLHEALVRFRYAQRGVAERGAGEIELTRASLAARAGDWEARLEQHQAELAACRSRGGDCSAYAWAVEQAAERLEHVRRWQQRVDTEAGEFGGTASTFLDLLDSDLPRAESQLLAGIASLEAARRVQARAP
Ga0335074_100012835F013663AGGMHTRPDRDGDEQLRLLGAAWEEADRHWRDEVARQFEADHWAPLVQRSRAYLDALCAMMDLLETAERETEF

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