Scaffold Ga0335074

Basic Information
Taxon OID	3300032895 Open in IMG/M
Scaffold ID	Ga0335074_10000006 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032895 Open in IMG/M

Scaffold ID

Ga0335074_10000006 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	599626
Total Scaffold Genes	566 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	414 (73.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

599626

Total Scaffold Genes

566 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

414 (73.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5059	Long. (^o)	-80.2517	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5059

Long. (^o)

-80.2517

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000236	Metagenome / Metatranscriptome	1499	Y
F001450	Metagenome / Metatranscriptome	692	Y
F060173	Metagenome / Metatranscriptome	133	Y
F090675	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_10000006119	F000236	N/A	MIPMRKKIFWATFTMLGVMADLFLPLMWALIATIPIGFISWWFAYRSDWF
Ga0335074_10000006177	F060173	AGGA	MTGKRYYLTTLGAWQRHAHRFANSHWVAVGGSSSTAAPLNPGDATPIAVLVEADEGAHLALEDDTAFEPLPHPLSPRPLSASAQAALALHGVPAGATAFDASEALARLHPLLKYRVF
Ga0335074_10000006195	F001450	GAGG	LIHVVRETHDAPAEIQRRIARAGGANRFGEPNFRIVWGGSRLGWIGGRWVDRDASGNVIRETIELRRVPKYLPHDRWHIERWLPPEAYGSPELWYAQTVECEDGIRIPALGPFPRRGEYEHCFTLEDSGGGFLPLTDAACHWIVRAIEWARRQPRQVARHALKERERLREEQWDSAADAILDDAVPAFHGQPFVSGTPRRAQETKPTRP
Ga0335074_10000006478	F090675	GGAGG	MFESVIPAERRPVSVVGSRWLWAARCSALIYTIFLVAECLVEALSEPAPALLILLFTYGARVLLALVLLYFLFRGEIKSLAFALGLGAATAFIALFGVASNALFWPIGRSFNLFLALVIFSPVTPPFVAMMHQPDPHLAAVGLSLFWSFGICSAVLGAASVATFRNISLEANAVGALRFAFRAGIFCPLAVWLVFALLILIWIATGGGIHI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335074_10000006

Overview

Ecosystem & Geography

Associated Families

Sequences