NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10061912

Scaffold Ga0335069_10061912


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10061912 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4852
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F044616Metagenome154Y
F063538Metagenome129Y
F072981Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_100619123F063538AGGAGVHQENTTITTFQFRLNGIIIPHLKVRPVMLDGVVNHWELVACHEALGEFAIDDNEGLADSALTPFILELRDVTIPPIERRYLPDKGWKQMTMSECIALLESSGVIDIF
Ga0335069_100619126F004185AGGAGGMSLSKEYIRDGKRRIIGSVTTGYTGGTSTIVRDEHNEITGRTSERFNTVRDSHGSLVSINSSDPGLLIGHKK
Ga0335069_100619127F044616AGGAGGLSTKAAAVPSAPETIECPLCSGVGELSRAEILDRLGVKDFARVAQLSAEEAFRLLHQKHSSDHQNAWSRFESELTKRTAELRERFKDELRLATSERDNLSRRVEDSLREIAQLREKNQLLEGEMAKVARVGKREEVDFAEEARTWAGVWISDKLPRNGDFVLCYRAPNGEPVEPKILIDNKDKATIAEGDIDKLVRDARERSVSVAVLVARSEDQLRQADKKSRWSRRDSVWILRTTRQWLPRDLDVLKPLFERMRLHGADFLEKNAAVAEEVRRTFCDLDRIEGELKKATKAISSASGLVSKYRSNLQELCESAVGSKMPPEREVSAVRIG
Ga0335069_100619128F072981AGGAMRIEVERGAIIGDEEGGLWRVLGVTDDGLLLLMLPERRKIVHTRRVSWRDFVECGYEVKF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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