Scaffold Ga0335069_10009615

Overview

Basic Information

• Taxon OID: 3300032893
• Scaffold ID: Ga0335069_10009615
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13753
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045053	Metagenome / Metatranscriptome	153	N
F051827	Metagenome	143	N
F078490	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335069_1000961513	F078490	AGGCGG	MACRKKRLTRVEVEKCEFNGQQLRFVTGRTRDVAGSRKLSRLTSLLLPRGTYEKRIPRAIRKLLIP
Ga0335069_1000961514	F051827	AGGA	VKRQIYLVQNSGGVSLEVVGGPFDPDAAGEIEEAIIRRVKEDSGLRHGGDDTLHKLEIAPGCTPEFGGFSGGYMENIRWVAAGCPAEEKPDTWDQLDFALTSKENARETNGI
Ga0335069_100096158	F045053	GGA	MIPVASYNIPGFGEVDVVQQNDAGNRIWDLFSASGEWLNEGHPFRCKPRRAQVEAVLAERLAEALVRIKKECKKLRITQEDLDELVHEAAQRDNKRVNQTSDAKRQERLITSAEQHAARVNNGGRASQLVYLLEVYGEVGVLGVLRDSRKANA