NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10009615

Scaffold Ga0335069_10009615


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10009615 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13753
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045053Metagenome / Metatranscriptome153N
F051827Metagenome143N
F078490Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1000961513F078490AGGCGGMACRKKRLTRVEVEKCEFNGQQLRFVTGRTRDVAGSRKLSRLTSLLLPRGTYEKRIPRAIRKLLIP
Ga0335069_1000961514F051827AGGAVKRQIYLVQNSGGVSLEVVGGPFDPDAAGEIEEAIIRRVKEDSGLRHGGDDTLHKLEIAPGCTPEFGGFSGGYMENIRWVAAGCPAEEKPDTWDQLDFALTSKENARETNGI
Ga0335069_100096158F045053GGAMIPVASYNIPGFGEVDVVQQNDAGNRIWDLFSASGEWLNEGHPFRCKPRRAQVEAVLAERLAEALVRIKKECKKLRITQEDLDELVHEAAQRDNKRVNQTSDAKRQERLITSAEQHAARVNNGGRASQLVYLLEVYGEVGVLGVLRDSRKANA

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