Scaffold Ga0335081_10387390

Overview

Basic Information

• Taxon OID: 3300032892
• Scaffold ID: Ga0335081_10387390
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1804
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045645	Metagenome	152	N
F063278	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335081_103873902	F045645	AGG	MALGSSRWSLSHLCARQVFTSIEAGGQEFTQRPTMGEGLHKRGTGNLDMKLQEATLKTLKRVAGVYAVRPIIRGKALTLRQGRDGHELAQDEGETVRVVAVSDVKPSLLSFAAINGIPVKNYTDMAASKPRVSSAPKPAEVPELVM
Ga0335081_103873903	F063278	N/A	MKERYLVIGFQPAAKRISLDSEWAEAAASALMAITEVRKHTDVLLAWTPAQMRQMADLLSAMTPEQIAFNRRLTKLEEKAFPGGQTARPMVRMVEPHGGPFLVISYNPATEAVHLDTEWSDSPDAALVSAAGIRRRAHVILALTPEQLRQMAANLERLTLDQIARNRRAAEHEEMTFYSELGARR