Scaffold Ga0335081_10220471

Overview

Basic Information

• Taxon OID: 3300032892
• Scaffold ID: Ga0335081_10220471
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2598
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035367	Metagenome	172	Y
F045645	Metagenome	152	N
F063278	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335081_102204711	F045645	N/A	IQCPSRRFRSRPIMGQDLHECGTEDLDMKLQETMLTVLKSVAGVYAVRPIIRGKALSLRQGRDGHELAQDEGQAVRVVAVSDAKPSLLSFAAINGIPVKNYTDMAVPKPKAPSAPKPAEVPELVM
Ga0335081_102204712	F063278	N/A	MKERYVIIGFQPPTRRISLDSEWAESATDAMKAVAGMRKAADVLLAWTPGQMRLMADLLAAMTPQQIAFNRRTAELEERASRASQTAPPQVRTASPQQQPFLVISYDPVTEAVHLDPELNDSSDAALRSVAGVRGRAHVILAFTPGQLREMAANLEGLTAEQMARNRRAAEQEEKTFYAELAARQ
Ga0335081_102204714	F035367	GGCGG	MFILVLNAVLCGFFGLGIAVTHFLWLEYATVRWPKVRYTDDYQTSFALACAAVVFVLTTLRQIKTRLESKSLRPGEIVFILIFAAIVMVGLTPVPGSNFPQYLYEMNYPGNKDTSKQEPKSEEEAKPLKLKRDYP