NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_10085178

Scaffold Ga0335081_10085178


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_10085178 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4765
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049197Metagenome147N
F097854Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0335081_1008517810F049197AGGGGGMVREEARRTLLREYDKWAKDHPDDATKRGGVVFFAYLQKKRSNLLDFHAVGGDKWATVHGWLYYTGRVKD
Ga0335081_100851784F097854N/AMRQLTNVIVSVGLICAGLYVLYEELFVRYSGIHGRYGPFGVGLALIGSGIVWLWFYVLGPIVLKRLEREE

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