NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_10044635

Scaffold Ga0335081_10044635


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_10044635 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7006
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003175Metagenome / Metatranscriptome503N
F004122Metagenome / Metatranscriptome452Y
F008922Metagenome / Metatranscriptome326Y
F035411Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0335081_100446351F035411GGAGGMPDHDNGCEAAVAEIAASTELAKGFTLFQIEESLVLLAESAEEEGLTPEIERALTVYLEGAAEKRDRVADFIHFCEGMAELAKAE
Ga0335081_100446353F004122GGAMDPVLYQRCLTAVCRSRRSAISRTDLQRAAGLAFQEETLDFDLLVARLVREGILEPIVSSPFHFQIRRRNWTNPESAYAADDRLSLSTISREEQTARFQMLGLLDARILSPRLPEKRVQQIRKERDELDRIYEATWMELENALGSKAAEAIRKSVEETTEAGAVQLDLPLEKKRNFDLEGEARCNQ
Ga0335081_100446356F003175GGAGMRRICGGQTDEPDRVQRQIPREGRNGYFQVHSVELMNIPTDPDGQVLNIDFYPRRRVNCVAPARLLLNVKDATKLAQFFGEAVGNRPPVANIEHGELVCEWGHRGTPRLEESGYQVFHALVEIIGDTIIASGWDGSSRAVSEEGDAYWLMCDACGKLHPLPPELHIDWR
Ga0335081_100446357F008922AGGTGGMTTKQRLACGTAILRSIDARRQRTGNRNELLALEQAILDRELIELVTGGLCGEKRELGGDRVRTRHVPAATRDPGALYEKDLRRANR
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