NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10076080

Scaffold Ga0335070_10076080


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10076080 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3587
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034408Metagenome / Metatranscriptome175Y
F091541Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_100760803F091541AGGAMARNTNRSIVGRRTARFGDSQDKTRRLQFGLGAAPGDLRGADKCLRCSFGNIPVIEEVVWTIPLPLTAEEAISTLGDTVNLLSGSSSVPGVASIDSTFLINGILQTDILAQGVGVHVFHEPMSFSTIGNAFNAPTTTVNPPPSPDVFTVNDLTNRAMSTQVLADGSNFTPADFIFGGDVWRAGWNFINAYQFQWKTSQRELILNEIAADVSYFGSFADAEASGTSEIAIIEFVAAVNATYRSKGSATIFLPVNFRRVGSVNGGSATNNVGIFHPTRDFDLAPVTWGGLRWQGYGCRGQMYRPIESPCFLERGIPIGMLFVVQDAVHQALMLEAVSINNDPLGSNISPDENLLCTTAVLPAPATPGTPTAGAIVAGGVNTMLEQTLDATPVLVPQSVGVCREVFKGGILKLGIKIKGWEMPGGWKAYCENNMPQIMKPTASAS
Ga0335070_100760804F034408GGAGMEPRDHNVANLALYAPRMAYAMMIGVPRVPLIVDIPIQFSSSVVNAPPVVQSFQNNLTQDTLITRVTYNLFQPNSFPGSPFQSTYFNQLKQSGQTGVGVQMAVYGGPKYNVNDTFTDLGNLFDVFAMTWPSGWPLYKQSNVKVSAILTQTPVSVPYLIGITFTGFQFLDKTIDDISDEDARARLRKLGLQTPDLSVLLPNK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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