Scaffold Ga0335070_10006068

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10006068
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14221
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013245	Metagenome / Metatranscriptome	273	Y
F022932	Metagenome / Metatranscriptome	212	Y
F044641	Metagenome / Metatranscriptome	154	Y
F058377	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_100060681	F022932	N/A	REGEEAITKVSLETWRMFDRLSRATEYGRVVSPGSGTR
Ga0335070_1000606811	F013245	GGAGG	MSGKRLCVALLVVTTIFAVSAVAQEEKNEIGGIIGRTFISDQGIQNANFFNPTIHSGKGLTIEGEYARRFWVTPIYAISAEGLFVYNWDVDLNAGEYGHSVVPPDLKKLFITPAARVNLFPTTAVSPWVSFGAGFGHTSQYKQLLFGGTNPGKSTTSAVIEAGFGLDVKVWKKLSLRMDVRDFWAGEPDFPLAPTGHTRQHNFFVGGGAIWRF
Ga0335070_1000606814	F058377	AGGAG	MSFYRTEAADYSYLLQEAAARTGFSASEMQELLECELNIDDLLIYITAVVSNRMN
Ga0335070_1000606815	F044641	N/A	MSQWKVTAPALLVLSIVVFFMLVIVVLPEVDLPDTAFHQDTAPLVVHTRAVTAPPIIAVAALFQFPRIIQFWHPERDLQLVATHQDPNFRPILLRSIRR