NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10001711

Scaffold Ga0335070_10001711


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10001711 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25439
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (64.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F048490Metagenome148Y
F077693Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1000171110F048490GAGGMPELSTIYDYMRCHAALLGERILQEYPALHQFEDCSFPSD
Ga0335070_100017116F077693N/AMKRTRESVLRLPMEKRAELAFCEAVDEVITEHARLGLPLYIGRNGKVVKLSANKVRGLSRSNHHK
Ga0335070_100017117F000208GAGVTTKADLFEKRKQQHIDRGYRIEDERPIPVNGFCSFIAVSEIPDSDGIGELVTKAFNGMP

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