Scaffold Ga0335070_10000273

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10000273
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60183
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (72.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055598	Metagenome / Metatranscriptome	138	Y
F083163	Metagenome	113	Y
F092611	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_1000027312	F092611	GGAGG	VAKLDAQGIATLIEQLLASITAVGPAGIELFLKLQSLFTLGPDEQANVAAAIKAGLAADTDTIAAVEAWKQQVGL
Ga0335070_1000027313	F083163	GGAG	MKLRITLAILLTAIATACIHKQSGPISPWERVNVNLAALAQINADVAKGLIAVQQAGVVPAQQAAPILNYQEMVAKDHMAIENILAAGSTQAASQSAQIQALLNEIRNQGTALIQSGGLGVKNPKSQQTFTQDLQGIINLAEVVLADYQQVEGK
Ga0335070_1000027332	F055598	N/A	MNLSFLPGDLHLSRNESGLFVVTMCGQKILCTKSQRSAVARFNTLRAELEKEFPQREPTAKERAELLQREINESLLGHNSLGGRKKKTTAGGTRTFGG