NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10000006

Scaffold Ga0335070_10000006


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10000006 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)446307
Total Scaffold Genes412 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)329 (79.85%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F000781Metagenome / Metatranscriptome895Y
F000885Metagenome / Metatranscriptome849Y
F006229Metagenome / Metatranscriptome378Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F015120Metagenome / Metatranscriptome257Y
F015514Metagenome254Y
F017187Metagenome / Metatranscriptome242Y
F023670Metagenome / Metatranscriptome209Y
F030173Metagenome / Metatranscriptome186Y
F045397Metagenome / Metatranscriptome153Y
F053821Metagenome / Metatranscriptome140Y
F062024Metagenome / Metatranscriptome131Y
F084509Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_100000062F062024N/AMNPKEISAFLAPPTLTAKETLLLFTGAAITLLVVASGTSFYNHDYRHGIWCFLVAIVLGLVFFRKRKTALVVSGLCCLSVLGSLGFPFHPSVAAFLLLVGCYAALYFWARWSHRKYPYLSFRQMHTVFEGEAAMAAENARIEAQARELVKKRPFGPWLFR
Ga0335070_1000000621F009917AGGAMLTSGWTYLAVAFSFGAQLIVFLRWMHRRMRDDEIQRVFVRDLALRYLPNIYRALHTIAEQQGIELDETPIVNYVDLRNGSRHR
Ga0335070_1000000624F007488N/AMEIRAYEESDLDSLKAIHAQQGFGYAFPDLRNPLFLTKLVLGREEGGKGIVAASLLRVTAEAYLLLDPEAGTPRERWQWLLGLHEATRRDALARGLEDVHAWLPPPISAKFGKRLARLGWVRDDEWTPYCRRLS
Ga0335070_1000000625F000781N/AMLTVAQLAPIKDRDPYLYETLVKMVSAINATSANSGVDPANPSPAPPPIAGISVQAANGWFDLAITDPAVTRPGLFYFAESDLTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPVAFGAPPTAVLGGGASGPSPLPSMGSGALPNGLFRGGNGFGIVPGARIVKQITL
Ga0335070_1000000626F084509GGAGGMPSYANVVPPSSVGFGETAVVIASTDTIFPAPFKSAQVALAPNFSTGKIRVAVELVWSAAPGAISVQLQMADTDIDAAYSQEGAAITAVNSGNVTRAEFPDVVAKFARIYIATLPNSVTATGKISS
Ga0335070_10000006276F017187GGAGGMSRSWSIEKRLMLLGMGGAFLLLAAPQGRAQTADVAGEYVCTEAHVAGKSVKCTAPPLSLKGDGKFELQGREGEYLVNGHWVELNGEVLKSRAKIEAGHKIVFRFTNKKGACEMIFERRIAELGKTKLG
Ga0335070_1000000629F006229GAGMSQQNDVVSLVNISGQKWPPRHRAYFGSLVIQSPEPGQEFAVTPIRGCASIMDLGDKRTMEIRLSAREIADDLVRELNGDSGEGSFHGVFVAAGPEPTGAELADARKKLEQFHSRLVEAADLEWERSHDLMFITDLERRAARELRLEKPWLYDRKPLADCPACGEKIKPGVAVCRSCRAILDREKAAEFGLVEREETRVSEAGKQPASLAEKGKRK
Ga0335070_10000006301F023670GAGGMATDDTKRAAQEFLAAKMSEETEQQERELNREAALRLAPKVWKLVHETFVTQCKAWNDILHEEALSCKETILGDLRIRVAGKPQHITVHYDSRKLQVTIQNTARPEHEGDSIFYIQGWASGTEAHLFRNDQKANLEVVVLGELRVLAGIGRTAAQ
Ga0335070_1000000633F000739AGGAGMRASRIEVWLKGLVAAGISGGAGGVMTGLAAVGIDPGHFNLQTGLGATMRIGAAAALINSVMGVAAYLQKSPLPEEEVKTS
Ga0335070_1000000634F000512GAGVLAARSLVLHLLYFLYLIYLISSIGMIQVIREKHDTPENVARRLSLAGGVNRYGEPNYRVVWGWNRLGWIGGKFEDRDAAGNLLREVVELRWEPKYPQVNRWHVERWVPPEAYGSPATWYSQTIERAGGKSVAALGPYPDRGEYEHCFTLQGPRGEFLQLTPTIVAYVAHAIEWSRGQGSAKQRAGLYEREEREDRAYEQWAYDLMDDSVPAMHGLPFVTVK
Ga0335070_1000000638F015120GAGGLSLFEILKKAFQTRYVGMLEGEVLRLRMENRSLMNSLLGTAGFPPLDFAEPVRSAELPRMRRRSWQQIQRKNELEAAKDAEVTK
Ga0335070_10000006396F045397AGGAGMRISKNHLRWAMLGCVAVLAACTLRHALAQEQKPPSLPLPEMQRLAHLYAGKWEYTETYPKAGQNTGVYTSEAGPGGNSIINRFHSKGPVGEFEGMLIMTWEPNEKAYKAYALGGDFPGALVETGQWEGDSLVYRAEVTMGSRKLSLRNTTKFLDGGKIESDEYSSANGGPEKLLVHVEAVRK
Ga0335070_1000000640F000885AGGAGGMANTSVSANPKVVFIGEVTQIAGVASVVGGVVLSLHHWPAAAALIGGLAAYFVGKKLRGA
Ga0335070_10000006406F015514GGAGMHRNIARAYDYLKREHDRIRAAYVKILAQNDRSLERHLFRADLDSPRHHDEILLYEERLSRPQRRRVVGLNRYGRKLESIMGALLRL
Ga0335070_1000000646F000188N/AMSVKPELAFDVCWEVYRGAREVMESKRGIAALNMEMETKYAWRPDIRPKMKDWVADFALAGQSALEGPECASRMVMFRLYYLGLVPYDRARHFLGLSERGWVNWSEEIRRKCGAEILRRGMFPPRKYFNGGE
Ga0335070_100000067F030173AGGMTAWYNKSSAPEDPMKSQDGSHPVAYAVLSGIVVGLFLPVVGLLLDTHDTYFSALLPASLASGAIVAFFVWRRERQASFSQPHGPFESGRADANKLRPKDVWTPEPKQLVPFGPGGVGQWTAHPIGLVIVIGLVLMGLVSRSPVRDLMLFSLLGGAIVGLFLWLYHRR
Ga0335070_1000000686F053821N/AMTSRPLIRFLLRCGLCAVGALCFTSFLPAPTHAQNLDKPSVTIDEEVTAFAYAPDGRIVFSVRRMFKTKKFDLQRDDIWLMEPGGKRKRIFEGQKFTNGQPLFTYQVESFTWSPNNHIIAVSLFTTTMDPDSGSRDDSPALLLLEDSGREIHPNGKDLLVTGAQSPLWLRDNQTLVYLTFGDNPQGLLSLEYLNISSGPAGKAFEGRTFEGASRVSGSNSAIAIERPPRYEGPARLQRLDLLSQDDKEVATLDAYAGGISVSPSGNFVAYFLDKEVLEIRDLAVPARVARLRVGLGVLQWSPDESRIYLKRTVEKKSADLVSFQLPQLRAYPPHSEIPVDQPDPRQLLHGLTVREYSLSPDGRSLAIVLPGKRNLQIFPF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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